Re: Naruto >>Madara (READ READ READ)
Rinnegan, maybe he has and maybe he hasn't, manga hasn't shown proof yet so can't say but regardless whether he has mastered the Rinnegan or hasn't, he still possesses the abilities granted by the Rinnegan because he automatically receives them. Example (a), Example (b), & Example (c), as you can see in the "examples", Sasuke hasn't mastered his MS at those points but was still able to use the techniques granted from it.
Originally Posted by SakuXNaru
Also, yes Sage Mode > Preta Path but Madara is very experienced in battle, if not the most experienced currently and wouldn't use Preta Path on Sage Mode because of the consequences. Now we've already seen Sage Mode Naruto attempt to defeat Madara while using his EMS and he can't, he can't even get past Lower version Susanoo's (Incomplete, Complete, Final) so Sage Mode Naruto getting past Perfect Susanoo seems very impossible for him.
Wood Release, if Naruto or any of his Clones were to get in range of Flower World they would be rendered unconscious, and Naruto would have to fight off Madara while also focusing on Flower World to make sure he doesn't get in range and Wood Release to make sure he doesn't get captured or having his movement interrupted, like it was Here. Naruto has 2 options to counter & destroy Flower World; Rasenshuriken & Tailed Beast Ball which both become neutralized by Preta Path, Madara himself may not be able to go in range of Flower World to stop Naruto from destroying it because he may or may not have an immunity to it but his Wood Clones should be unaffected by it and could also use Rinnegan abilities such as Preta Path.
Perfect Susanoo, there's no proof a Tailed Beast Ball can break through Perfect Susanoo's defense, I highly doubt it could for Final Susanoo also, but regardless of that, Preta Path & Gunbai would render Tailed Beast Ball useless.
According to Susanoo & Manga, Amaterasu & Tsukuyomi are extensions of Susanoo, so although Madara hasn't been shown to use them yet, he can because he can use Susanoo.
Genjutsu, although there's no proof Madara can suppress Kurama's chakra while sealed within Naruto, he may be able to or may not. Shown Here, after you've reached a certain level with the Sharingan, you are able to see Tailed Beasts sealed within Jinchuriki and Madara is well beyond that level. It's already been noted that Madara is able to control Kurama with his Sharingan, because Kurama is sealed within Naruto and he has complete control is irrelevant as seen Here. Despite Isobu being sealed within Yagura who was said to have complete control also over Isobu, Obito was able to completely control Yagura & Isobu with Genjutsu.
Taijutsu, that's your opinion and Naruto does have exceptional Taijutsu but he doesn't have better Taijutsu then Madara with combined support from Rinnegan abilities & Susanoo forms. Preta Path aside, BM Naruto could compare because of partial formations but without it, Sage Mode alone doesn't compare.